vampire.quickstart.transform_dataset#

vampire.quickstart.transform_dataset(img_set_path, model_path, output_path, img_set_name, filter_info, write_csv=True, write_contour=False, savefig=True)[source]#

Apply VAMPIRE model to one image set.

Parameters:

img_set_pathstr: Path to the directory containing the image set(s) used to apply model.
model_pathstr: Path to the pickle file that stores model information.
output_pathstr: Path of the directory used to output model and figures. Defaults to img_set_path.
img_set_namestr: Name of the image set being applied to. Defaults to time of function call.
filter_infondarray: Regex filter(s) of image filenames to be analyzed. Empty if no filter needed.
write_csvbool, optional: Whether write apply model data to csv. Could be time-consuming if csv is large.
write_contourbool, optional: Whether write and save raw contour coordinates.
savefigbool, optional: Whether save distribution contour dendrogram.