API Reference

• Index

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• Model
  • vampire.model.initialize_model
  • vampire.model.build_models
  • vampire.model.build_model
  • vampire.model.apply_models
  • vampire.model.apply_model
  • Implementation Details
• Extraction
  • vampire.extraction.extract_contours
  • vampire.extraction.write_contours
  • vampire.extraction.read_contours
  • vampire.extraction.get_info_from_folder
  • vampire.extraction.get_properties_from_image
  • vampire.extraction.get_contours_from_image
  • vampire.extraction.get_contour_from_object
  • Implementation Details
• Processing
  • vampire.processing.sample_contours
  • vampire.processing.sample_contour
  • vampire.processing.register_contours
  • vampire.processing.register_contour
  • vampire.processing.align_contours
  • vampire.processing.align_contour
• Analysis
  • vampire.analysis.pca_contours
  • vampire.analysis.pca_transform_contours
  • vampire.analysis.cluster_contours
  • vampire.analysis.assign_clusters_id
• Plot
  • vampire.plot.plot_distribution_contour_dendrogram
  • vampire.plot.plot_distribution_contour
  • vampire.plot.plot_contour_dendrogram
  • vampire.plot.plot_distribution
  • vampire.plot.plot_dendrogram
  • vampire.plot.plot_contours
  • vampire.plot.plot_representatives
  • vampire.plot.set_plot_style
  • vampire.plot.save_fig
  • Implementation Details
• Applied Math
  • vampire.amath.mean_center
  • vampire.amath.get_rotation_matrix
  • vampire.amath.pca
  • Implementation Details
• Utility
  • vampire.util.read_pickle
  • vampire.util.write_pickle
  • vampire.util.generate_file_paths
  • vampire.util.write_clusters_info

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